[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 124 items for (author: craig & ta)

EMDB-36794:
Cryo-EM structure of Na+,K+-ATPase alpha2 from Artemia salina in cation-free E2P form
Method: single particle / : Abe K, Artigas P

PDB-8k1l:
Cryo-EM structure of Na+,K+-ATPase alpha2 from Artemia salina in cation-free E2P form
Method: single particle / : Abe K, Artigas P

EMDB-29722:
Cryo-EM structure of the human cardiac myosin filament
Method: single particle / : Dutta D, Nguyen V, Padron R, Craig R

EMDB-29726:
Cryo-EM structure of the human cardiac myosin filament
Method: single particle / : Dutta D, Nguyen V, Padron R, Craig R

EMDB-29734:
Cryo-EM structure of the human cardiac myosin filament
Method: single particle / : Dutta D, Nguyen V, Padron R, Craig R

PDB-8g4l:
Cryo-EM structure of the human cardiac myosin filament
Method: single particle / : Dutta D, Nguyen V, Padron R, Craig R

EMDB-17819:
XBB 1.0 RBD bound to P4J15 (Local)
Method: single particle / : Duhoo Y, Lau K

EMDB-17849:
XBB 1.0 RBD bound to P4J15 (Global)
Method: single particle / : Duhoo Y, Lau K

EMDB-17850:
SARS-CoV-2 XBB 1.0 closed conformation.
Method: single particle / : Duhoo Y, Lau K

PDB-8pq2:
XBB 1.0 RBD bound to P4J15 (Local)
Method: single particle / : Duhoo Y, Lau K

PDB-8psd:
SARS-CoV-2 XBB 1.0 closed conformation.
Method: single particle / : Duhoo Y, Lau K

EMDB-17172:
Ternary structure of intramolecular bivalent glue degrader IBG1 bound to BRD4 and DCAF16:DDB1deltaBPB
Method: single particle / : Cowan AD, Sundaramoorthy R, Nakasone MA, Ciulli A

PDB-8ov6:
Ternary structure of intramolecular bivalent glue degrader IBG1 bound to BRD4 and DCAF16:DDB1deltaBPB
Method: single particle / : Cowan AD, Sundaramoorthy R, Nakasone MA, Ciulli A

EMDB-29735:
Structure of nucleosome-bound Sirtuin 6 deacetylase
Method: single particle / : Chio US, Rechiche O, Bryll AR, Zhu J, Feldman JL, Peterson CL, Tan S, Armache JP

PDB-8g57:
Structure of nucleosome-bound Sirtuin 6 deacetylase
Method: single particle / : Chio US, Rechiche O, Bryll AR, Zhu J, Feldman JL, Peterson CL, Tan S, Armache JP

EMDB-28596:
CryoEM Structure of NLRP3 NACHT domain in complex with G2394
Method: single particle / : Murray JM, Johnson MC

PDB-8etr:
CryoEM Structure of NLRP3 NACHT domain in complex with G2394
Method: single particle / : Murray JM, Johnson MC

EMDB-14141:
SARS-CoV-2 S Omicron Spike B.1.1.529 - 3-P2G3 and 1-P5C3 Fabs (Global)
Method: single particle / : Ni D, Lau K, Turelli P, Fenwick C, Perez L, Pojer F, Stahlberg H, Pantaleo G, Trono D

EMDB-14142:
SARS-CoV-2 S Omicron Spike B.1.1.529 - RBD up - 1-P2G3 and 1-P5C3 Fabs (Local)
Method: single particle / : Ni D, Lau K, Turelli P, Fenwick C, Perez L, Pojer F, Stahlberg H, Pantaleo G, Trono D

EMDB-14143:
SARS-CoV-2 S Omicron Spike B.1.1.529 - RBD down - 1-P2G3 Fab (Local)
Method: single particle / : Ni D, Lau K, Turelli P, Fenwick C, Perez L, Pojer F, Stahlberg H, Pantaleo G, Trono D

PDB-7qti:
SARS-CoV-2 S Omicron Spike B.1.1.529 - 3-P2G3 and 1-P5C3 Fabs (Global)
Method: single particle / : Ni D, Lau K, Turelli P, Fenwick C, Perez L, Pojer F, Stahlberg H, Pantaleo G, Trono D

PDB-7qtj:
SARS-CoV-2 S Omicron Spike B.1.1.529 - RBD up - 1-P2G3 and 1-P5C3 Fabs (Local)
Method: single particle / : Ni D, Lau K, Turelli P, Fenwick C, Perez L, Pojer F, Stahlberg H, Pantaleo G, Trono D

PDB-7qtk:
SARS-CoV-2 S Omicron Spike B.1.1.529 - RBD down - 1-P2G3 Fab (Local)
Method: single particle / : Ni D, Lau K, Turelli P, Fenwick C, Perez L, Pojer F, Stahlberg H, Pantaleo G, Trono D

EMDB-24060:
Structure of the SARS-CoV-2 Spike trimer with all RBDs down in complex with the Fab fragment of human neutralizing antibody clone 6
Method: single particle / : Hu Y, Xiong Y

EMDB-24061:
Structure of the SARS-CoV-2 Spike trimer with two RBDs down in complex with the Fab fragment of human neutralizing antibody clone 6
Method: single particle / : Hu Y, Xiong Y

EMDB-24062:
Structure of the SARS-CoV-2 Spike trimer with one RBD down in complex with the Fab fragment of human neutralizing antibody clone 6
Method: single particle / : Hu Y, Xiong Y

EMDB-24063:
Structure of the SARS-CoV-2 Spike trimer with one RBD down in complex with the Fab fragment of human neutralizing antibody clone 2
Method: single particle / : Hu Y, Xiong Y

EMDB-24064:
Structure of the SARS-CoV-2 Spike trimer with three RBDs up in complex with the Fab fragment of human neutralizing antibody clone 2
Method: single particle / : Hu Y, Xiong Y

PDB-7mw2:
Structure of the SARS-CoV-2 Spike trimer with all RBDs down in complex with the Fab fragment of human neutralizing antibody clone 6
Method: single particle / : Hu Y, Xiong Y

PDB-7mw3:
Structure of the SARS-CoV-2 Spike trimer with two RBDs down in complex with the Fab fragment of human neutralizing antibody clone 6
Method: single particle / : Hu Y, Xiong Y

PDB-7mw4:
Structure of the SARS-CoV-2 Spike trimer with one RBD down in complex with the Fab fragment of human neutralizing antibody clone 6
Method: single particle / : Hu Y, Xiong Y

PDB-7mw5:
Structure of the SARS-CoV-2 Spike trimer with one RBD down in complex with the Fab fragment of human neutralizing antibody clone 2
Method: single particle / : Hu Y, Xiong Y

PDB-7mw6:
Structure of the SARS-CoV-2 Spike trimer with three RBDs up in complex with the Fab fragment of human neutralizing antibody clone 2
Method: single particle / : Hu Y, Xiong Y

EMDB-24610:
Structure of RNA-dependent RNA polymerase 2 (RDR2) from Arabidopsis thaliana
Method: single particle / : Fukudome A, Pikaard CS, Takagi Y

EMDB-24635:
Arabidopsis RNA-dependent RNA polymerase 2
Method: single particle / : Fukudome A, Pikaard CS, Takagi Y

PDB-7roz:
Structure of RNA-dependent RNA polymerase 2 (RDR2) from Arabidopsis thaliana
Method: single particle / : Fukudome A, Pikaard CS, Takagi Y

PDB-7rqs:
Arabidopsis RNA-dependent RNA polymerase 2
Method: single particle / : Fukudome A, Pikaard CS, Takagi Y

EMDB-13083:
L. pneumophila Type IV Coupling Complex (T4CC) with density for DotY N-terminal and middle domains
Method: single particle / : Mace K, Meir A, Lukoyanova N, Waksman G

EMDB-13858:
L. pneumophila Type IV Coupling Complex (T4CC) computed from WT particles where DotY/Z is missing (referred to as T4CCWTminusYZ at 6.3A)
Method: single particle / : Mace K, Meir A, Lukoyanova N, Waksman G

EMDB-13859:
L. pneumophila Type IV Coupling Complex (T4CC) computed from a sample where dotY/Z genes were deleted (referred to as T4CCdeltaDotYZ at 15A)
Method: single particle / : Mace K, Meir A, Lukoyanova N, Waksman G

PDB-7ovb:
L. pneumophila Type IV Coupling Complex (T4CC) with density for DotY N-terminal and middle domains
Method: single particle / : Mace K, Meir A, Lukoyanova N, Waksman G

EMDB-13190:
P5C3 is a potent fab neutralizer
Method: single particle / : perez L

EMDB-13265:
the local resolution of Fab p5c3.
Method: single particle / : perez L

EMDB-13415:
MaP OF P5C3RBD Interface
Method: single particle / : Perez L

PDB-7p40:
P5C3 is a potent fab neutralizer
Method: single particle / : perez L

PDB-7phg:
MaP OF P5C3RBD Interface
Method: single particle / : Perez L

EMDB-23574:
Structure of Plasmodium falciparum 20S proteasome with bound bortezomib
Method: single particle / : Liu B, Hanssen E, Leis AP, Xie SC, Morton CJ, Metcalfe RD, Tilley L, Griffin MDW

EMDB-23575:
Structure of Plasmodium falciparum 20S proteasome with bound MPI-5
Method: single particle / : Hanssen E, Liu B, Leis AP, Xie SC, Morton CJ, Metcalfe RD, Tilley L, Griffin MDW

EMDB-23576:
Structure of human 20S proteasome with bound MPI-5
Method: single particle / : Hanssen E, Xie SC, Liu B, Leis AP, Morton CJ, Metcalfe RD, Tilley L, Griffin MDW

PDB-7lxt:
Structure of Plasmodium falciparum 20S proteasome with bound bortezomib
Method: single particle / : Morton CJ, Metcalfe RD, Liu B, Xie SC, Hanssen E, Leis AP, Tilley L, Griffin MDW

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more